Package: slingshot
Title: Tools for ordering single-cell sequencing
Version: 2.20.0
Description: Provides functions for inferring continuous, branching 
    lineage structures in low-dimensional data. Slingshot was designed
    to model developmental trajectories in single-cell RNA sequencing 
    data and serve as a component in an analysis pipeline after 
    dimensionality reduction and clustering. It is flexible enough to 
    handle arbitrarily many branching events and allows for the 
    incorporation of prior knowledge through supervised graph 
    construction.
Authors@R: c(
  person("Kelly", "Street", email = "street.kelly@gmail.com", role = c("aut", "cre", "cph")),
  person("Davide","Risso", role = "aut",email = "risso.davide@gmail.com"),
  person("Diya","Das", role = "aut", email = "diyadas@berkeley.edu"),
  person("Sandrine","Dudoit", role = "ths", email = "sandrine@stat.berkeley.edu"),
  person("Koen","Van den Berge", role = "ctb"),
  person(
      "Robrecht", 
      "Cannoodt", 
      email = "rcannood@gmail.com", 
      role = c("ctb"),
      comment = c(ORCID = "0000-0003-3641-729X", github = "rcannood")
    ))
License: Artistic-2.0
Depends: R (>= 4.0), princurve (>= 2.0.4), stats, TrajectoryUtils
Imports: graphics, grDevices, igraph, matrixStats, methods, S4Vectors,
        SingleCellExperiment, SummarizedExperiment
Suggests: BiocGenerics, BiocStyle, clusterExperiment,
        DelayedMatrixStats, knitr, mclust, mgcv, RColorBrewer, rgl,
        rmarkdown, testthat, uwot, covr
VignetteBuilder: knitr
LazyData: false
RoxygenNote: 7.2.0
Encoding: UTF-8
biocViews: Clustering, DifferentialExpression, GeneExpression, RNASeq,
        Sequencing, Software, Sequencing, SingleCell, Transcriptomics,
        Visualization
BugReports: https://github.com/kstreet13/slingshot/issues
git_url: https://git.bioconductor.org/packages/slingshot
git_branch: RELEASE_3_23
git_last_commit: b0935a9
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
NeedsCompilation: no
Packaged: 2026-04-28 23:34:00 UTC; biocbuild
Author: Kelly Street [aut, cre, cph],
  Davide Risso [aut],
  Diya Das [aut],
  Sandrine Dudoit [ths],
  Koen Van den Berge [ctb],
  Robrecht Cannoodt [ctb] (ORCID:
    <https://orcid.org/0000-0003-3641-729X>, github: rcannood)
Maintainer: Kelly Street <street.kelly@gmail.com>
Built: R 4.6.0; ; 2026-04-29 05:01:35 UTC; unix
