Package: rfPred
Type: Package
Title: Assign rfPred functional prediction scores to a missense
        variants list
Version: 1.49.0
Date: 2025-07-23
Author: Fabienne Jabot-Hanin, Hugo Varet and Jean-Philippe Jais
Depends: R (>= 3.5.0), methods
Imports: utils, Seqinfo, data.table, IRanges, GenomicRanges, parallel,
        Rsamtools
Suggests: BiocStyle
Maintainer: Hugo Varet <varethugo@gmail.com>
Description: Based on external numerous data files where rfPred scores
        are pre-calculated on all genomic positions of the human exome,
        the package gives rfPred scores to missense variants identified
        by the chromosome, the position (hg19 version), the referent
        and alternative nucleotids and the uniprot identifier of the
        protein. Note that for using the package, the user has to
        download the TabixFile and index (approximately 3.3 Go).
License: GPL (>=2 )
Encoding: UTF-8
biocViews: Software, Annotation, Classification
RoxygenNote: 7.3.2
Config/pak/sysreqs: libbz2-dev liblzma-dev xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:15:50 UTC
RemoteUrl: https://github.com/bioc/rfPred
RemoteRef: HEAD
RemoteSha: 553494cec2fe426e5f2ba54bc6cfd7c5dac11505
NeedsCompilation: yes
Packaged: 2026-02-21 07:31:32 UTC; root
Built: R 4.6.0; aarch64-apple-darwin23; 2026-02-21 07:33:07 UTC; unix
