Package: parati
Type: Package
Title: Parental Allele Transmission Inference for Trio Genotype Data
Version: 1.0.0
Authors@R: 
    person("Jinyi", "Che", email = "chejinyi777@gmail.com", role = c("aut", "cre"))
Description: 
    Infers maternal and paternal transmitted and non-transmitted alleles
    from phased trio genotype data. The package supports SNP-level analyses
    of genetic nurture and transgenerational effects. It interoperates with
    Bioconductor VCF infrastructure through support for
    VariantAnnotation::VCF objects and returns R objects for downstream
    analysis.
URL: https://github.com/newche/parati
BugReports: https://github.com/newche/parati/issues
License: GPL-3 + file LICENSE
Encoding: UTF-8
RoxygenNote: 7.3.3
Imports: data.table, methods, openxlsx, R.utils, vcfR,
        VariantAnnotation, SummarizedExperiment, BiocGenerics,
        GenomeInfoDb
Suggests: BiocStyle, knitr, optparse, rmarkdown, testthat (>= 3.0.0),
        waldo
VignetteBuilder: knitr
biocViews: Genetics, SNP, Sequencing, VariantAnnotation, Software
git_url: https://git.bioconductor.org/packages/parati
git_branch: RELEASE_3_23
git_last_commit: 4abcfd9
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
NeedsCompilation: no
Packaged: 2026-04-28 23:05:14 UTC; biocbuild
Author: Jinyi Che [aut, cre]
Maintainer: Jinyi Che <chejinyi777@gmail.com>
Built: R 4.6.0; ; 2026-04-29 04:54:08 UTC; unix
