# Generated by roxygen2: do not edit by hand

export(abundance_based_binning)
export(algorithm)
export(assignments)
export(composition_based_binning)
export(hierarchical_binning)
export(metabinR_jvm_options)
export(nClusters)
export(parameters)
exportClasses(MetabinResult)
exportMethods(algorithm)
exportMethods(as.data.frame)
exportMethods(assignments)
exportMethods(nClusters)
exportMethods(parameters)
exportMethods(show)
importFrom(BiocGenerics,as.data.frame)
importFrom(BiocParallel,bpworkers)
importFrom(Biostrings,writeXStringSet)
importFrom(S4Vectors,DataFrame)
importFrom(ShortRead,writeFastq)
importFrom(checkmate,assert_character)
importFrom(checkmate,assert_count)
importFrom(checkmate,assert_file_exists)
importFrom(checkmate,assert_flag)
importFrom(checkmate,assert_int)
importFrom(checkmate,assert_string)
importFrom(cli,cli_abort)
importFrom(methods,is)
importFrom(methods,new)
importFrom(methods,setClass)
importFrom(methods,setGeneric)
importFrom(methods,setMethod)
importFrom(methods,setValidity)
importFrom(methods,show)
importFrom(methods,validObject)
importFrom(rJava,.jarray)
importFrom(rJava,.jcall)
importFrom(rJava,.jlong)
importFrom(rJava,.jnew)
importFrom(utils,read.table)
