Package: looking4clusters
Type: Package
Version: 1.1.0
Date: 2025-10-01
Title: Interactive Visualization of scRNA-Seq
Description: Enables the interactive visualization of dimensional
        reduction, clustering, and cell properties for scRNA-Seq
        results. It generates an interactive HTML page using either a
        numeric matrix, SummarizedExperiment, SingleCellExperiment or
        Seurat objects as input. The input data can be projected into
        two-dimensional representations by applying dimensionality
        reduction methods such as PCA, MDS, t-SNE, UMAP, and NMF.
        Displaying multiple dimensionality reduction results within the
        same interface, with interconnected graphs, provides different
        perspectives that facilitate accurate cell classification. The
        package also integrates unsupervised clustering techniques,
        whose results that can be viewed interactively in the graphical
        interface. In addition to visualization, this interface allows
        manual selection of groups, labeling of cell entities based on
        processed meta-information, generation of new graphs displaying
        gene expression values for each cell, sample identification,
        and visual comparison of samples and clusters.
License: GPL-2 | GPL-3
Depends: R (>= 4.4.0)
Imports: stats, utils, SummarizedExperiment, SingleCellExperiment,
        BiocBaseUtils, jsonlite
Suggests: knitr, rmarkdown, Seurat, parallelDist, uwot, NMF, fpc,
        dendextend, cluster, Rtsne, scRNAseq, Matrix
VignetteBuilder: knitr
NeedsCompilation: no
biocViews: Software, Visualization, DataRepresentation, GeneExpression,
        MultipleComparison, Classification, Clustering
BugReports: https://github.com/BioinfoUSAL/looking4clusters/issues/
URL: https://github.com/BioinfoUSAL/looking4clusters/
Authors@R: c( 
    person("David", "Barrios", email = "metal@usal.es", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-4465-0200")),
    person("Angela", "Villaverde", email = "angelavr@usal.es", role = "aut", comment = c(ORCID = "0000-0002-7337-7218")),
    person("Carlos", "Prieto", email = "cprietos@usal.es", role = "aut", comment = c(ORCID = "0000-0001-8178-9768"))
    )
Config/pak/sysreqs: zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:38:18 UTC
RemoteUrl: https://github.com/bioc/looking4clusters
RemoteRef: HEAD
RemoteSha: 7fb974efee0e982b2301e498226ed157dec0a4aa
Packaged: 2026-02-08 09:35:43 UTC; root
Author: David Barrios [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-4465-0200>),
  Angela Villaverde [aut] (ORCID:
    <https://orcid.org/0000-0002-7337-7218>),
  Carlos Prieto [aut] (ORCID: <https://orcid.org/0000-0001-8178-9768>)
Maintainer: David Barrios <metal@usal.es>
Built: R 4.6.0; ; 2026-02-08 09:47:21 UTC; unix
