Package: isomiRs
Version: 1.39.1
Date: 2025-12-23
Type: Package
Title: Analyze isomiRs and miRNAs from small RNA-seq
Description: Characterization of miRNAs and isomiRs, clustering and
        differential expression.
biocViews: miRNA, RNASeq, DifferentialExpression, Clustering,
        ImmunoOncology
BugReports: https://github.com/lpantano/isomiRs/issues
Suggests: knitr, rmarkdown, org.Mm.eg.db, pheatmap, BiocStyle, testthat
Depends: R (>= 4.4), SummarizedExperiment
Imports: AnnotationDbi, BiocGenerics, Biobase, broom, cluster, cowplot,
        DEGreport, DESeq2, IRanges, dplyr, GenomicRanges, gplots,
        ggplot2, gtools, gridExtra, grid, grDevices, graphics, GGally,
        limma, methods, RColorBrewer, readr, reshape, rlang, stats,
        stringr, S4Vectors, tidyr, tibble
LazyData: true
Authors@R: c(
    person("Lorena", "Pantano",
           email = "lorena.pantano@gmail.com",
           role = c("aut", "cre")),
    person("Georgia", "Escaramis", role = "aut", comment="CIBERESP - CIBER Epidemiologia y Salud Publica"))
License: MIT + file LICENSE
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Encoding: UTF-8
Config/pak/sysreqs: libicu-dev libpng-dev libssl-dev perl libx11-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-12-23 15:12:56 UTC
RemoteUrl: https://github.com/bioc/isomiRs
RemoteRef: HEAD
RemoteSha: a053d30b756e7ceaef3db67c974614026246fffb
NeedsCompilation: no
Packaged: 2026-02-22 04:32:05 UTC; root
Author: Lorena Pantano [aut, cre],
  Georgia Escaramis [aut] (CIBERESP - CIBER Epidemiologia y Salud
    Publica)
Maintainer: Lorena Pantano <lorena.pantano@gmail.com>
Built: R 4.6.0; ; 2026-02-22 04:35:04 UTC; unix
