immLynx-package	immLynx-package
calculate.clustcr	calculate.clustcr
calculate.metaclonotypist	calculate.metaclonotypist
calculate.olga	calculate.olga
calculate.sonia	calculate.sonia
calculate.tcrDist	calculate.tcrDist
calculate_helpers	calculate_helpers
convertToTcrdist	convertToTcrdist
extractTCRdata	extractTCRdata
generateOLGA	generateOLGA
huggingModel	huggingModel
immLynx	immLynx-package
immLynx_example	immLynx_example
proteinEmbeddings	proteinEmbeddings
runClustTCR	runClustTCR
runEmbeddings	runEmbeddings
runHLAassociation	runHLAassociation
runMetaclonotypist	runMetaclonotypist
runOLGA	runOLGA
runSoNNia	runSoNNia
runTCRdist	runTCRdist
show,TCR_summary-method	TCR_summary-class
summarizeTCRrepertoire	summarizeTCRrepertoire
TCR_summary-class	TCR_summary-class
tokenizeSequences	tokenizeSequences
validateTCRdata	validateTCRdata
