Package: iSEE
Title: Interactive SummarizedExperiment Explorer
Version: 2.24.0
Date: 2025-11-16
Authors@R: c(
    person("Kevin", "Rue-Albrecht", role = c("aut", "cre"), email = "kevinrue67@gmail.com", comment = c(ORCID = "0000-0003-3899-3872")),
    person("Federico", "Marini", role="aut", email="marinif@uni-mainz.de", comment = c(ORCID = '0000-0003-3252-7758')),
    person("Charlotte", "Soneson", role="aut", email="charlottesoneson@gmail.com", comment = c(ORCID = '0000-0003-3833-2169')),
    person("Aaron", "Lun", role="aut", email="infinite.monkeys.with.keyboards@gmail.com", comment = c(ORCID = '0000-0002-3564-4813')))
Description: Create an interactive Shiny-based graphical user interface 
    for exploring data stored in SummarizedExperiment objects, including 
    row- and column-level metadata. The interface supports transmission of 
    selections between plots and tables, code tracking, interactive tours, 
    interactive or programmatic initialization, preservation of app state,
    and extensibility to new panel types via S4 classes. Special attention 
    is given to single-cell data in a SingleCellExperiment object with 
    visualization of dimensionality reduction results.
Depends: SummarizedExperiment, SingleCellExperiment
Imports: methods, BiocGenerics, S4Vectors, utils, stats, shiny,
        shinydashboard, shinyAce, shinyjs, DT, rintrojs, ggplot2 (>=
        3.4.0), ggrepel, colourpicker, igraph, vipor, mgcv, graphics,
        grDevices, viridisLite, shinyWidgets, listviewer,
        ComplexHeatmap, circlize, grid
Suggests: testthat, covr, BiocStyle, knitr, rmarkdown, scRNAseq,
        TENxPBMCData, scater, DelayedArray, HDF5Array, RColorBrewer,
        viridis, htmltools, GenomicRanges
URL: https://isee.github.io/iSEE/
BugReports: https://github.com/iSEE/iSEE/issues
biocViews: CellBasedAssays, Clustering, DimensionReduction,
        FeatureExtraction, GeneExpression, GUI, ImmunoOncology,
        ShinyApps, SingleCell, Transcription, Transcriptomics,
        Visualization
License: MIT + file LICENSE
VignetteBuilder: knitr
Encoding: UTF-8
RoxygenNote: 7.3.3
git_url: https://git.bioconductor.org/packages/iSEE
git_branch: RELEASE_3_23
git_last_commit: 853e888
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
NeedsCompilation: no
Packaged: 2026-04-28 22:34:46 UTC; biocbuild
Author: Kevin Rue-Albrecht [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3899-3872>),
  Federico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>),
  Charlotte Soneson [aut] (ORCID:
    <https://orcid.org/0000-0003-3833-2169>),
  Aaron Lun [aut] (ORCID: <https://orcid.org/0000-0002-3564-4813>)
Maintainer: Kevin Rue-Albrecht <kevinrue67@gmail.com>
Built: R 4.6.0; ; 2026-04-29 04:47:32 UTC; unix
