adjust_ally	adjust_ally
assign_dms	assign_dms
available_colors	available_colors
available_fonts	available_fonts
available_msa	available_msa
extract_seq	extract_seq
facet_msa	facet_msa
geom_GC	geom_GC
geom_helix	geom_helix
geom_msa	geom_msa
geom_msaBar	geom_msaBar
geom_seed	geom_seed
geom_seqlogo	geom_seqlogo
gghelix	gghelix
ggmaf	ggmaf
ggmsa	ggmsa
ggSeqBundle	ggSeqBundle
Gram-negative_AKL.fasta	Gram-negative_AKL.fasta
Gram-positive_AKL.fasta	Gram-positive_AKL.fasta
GVariation	GVariation
LeaderRepeat_All.fa	LeaderRepeat_All.fa
merge_seq	merge_seq
plot	plot-methods
plot,SeqDiff,ANY-method	plot-methods
readSSfile	readSSfile
read_maf	read_maf
reset_pos	reset_pos
Rfam	Rfam
sample.fasta	sample.fasta
seedSample.fa	seedSample.fa
seqdiff	seqdiff
SeqDiff-class	show-methods
seqlogo	seqlogo
sequence-link-tree.fasta	sequence-link-tree.fasta
show	show-methods
show,SeqDiff-method	show-methods
simplify_hdata	simplify_hdata
simplot	simplot
theme_msa	theme_msa
tidy_hdata	tidy_hdata
tidy_maf_df	tidy_maf_df
tidy_msa	tidy_msa
tp53.fa	tp53.fa
TP53_genes.xlsx	TP53_genes.xlsx
treeMSA_plot	treeMSA_plot
