Package: gcapc
Title: GC Aware Peak Caller
Version: 1.35.0
Author: Mingxiang Teng and Rafael A. Irizarry
Maintainer: Mingxiang Teng <tengmx@gmail.com>
Description: Peak calling for ChIP-seq data with consideration of
        potential GC bias in sequencing reads. GC bias is first
        estimated with generalized linear mixture models using
        effective GC strategy, then applied into peak significance
        estimation.
Depends: R (>= 3.4)
Imports: BiocGenerics, Seqinfo, S4Vectors, IRanges, Biostrings,
        BSgenome, GenomicRanges, Rsamtools, GenomicAlignments,
        matrixStats, MASS, splines, grDevices, graphics, stats, methods
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, rmarkdown, BSgenome.Hsapiens.UCSC.hg19,
        BSgenome.Mmusculus.UCSC.mm10
URL: https://github.com/tengmx/gcapc
License: GPL-3
biocViews: Sequencing, ChIPSeq, BatchEffect, PeakDetection
RoxygenNote: 6.0.1
Config/pak/sysreqs: make libbz2-dev liblzma-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:35:52 UTC
RemoteUrl: https://github.com/bioc/gcapc
RemoteRef: HEAD
RemoteSha: ffa3e8b8c64035e9485ba6098e884fcdca2055bf
NeedsCompilation: no
Packaged: 2026-02-18 09:04:26 UTC; root
Built: R 4.6.0; ; 2026-02-18 09:07:26 UTC; unix
