Package: csdR
Title: Differential gene co-expression
Version: 1.18.0
Date: 07-11-2024
Authors@R: 
    person(given = "Jakob Peder",
   family = "Pettersen",
   role = c("aut","cre"),
   email = "jakobpeder.pettersen@gmail.com",
   comment = c(ORCID = "0000-0002-3485-1634")
   )
Description: This package contains functionality to run differential gene co-expression across two different conditions.
    The algorithm is inspired by Voigt et al. 2017 and finds Conserved, Specific and Differentiated genes (hence the name CSD). 
    This package include efficient and variance calculation by bootstrapping and Welford's algorithm.
Depends: R (>= 4.1.0)
Imports: WGCNA, glue, RhpcBLASctl, matrixStats, Rcpp
License: GPL-3
Encoding: UTF-8
NeedsCompilation: yes
BugReports: https://github.com/AlmaasLab/csdR/issues
URL: https://almaaslab.github.io/csdR,
        https://github.com/AlmaasLab/csdR
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
LinkingTo: Rcpp
biocViews: DifferentialExpression, GraphAndNetwork, GeneExpression,
        Network
Suggests: rmarkdown, knitr, testthat (>= 3.0.0), BiocStyle, magrittr,
        igraph, dplyr
Config/testthat/edition: 3
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/csdR
git_branch: RELEASE_3_23
git_last_commit: 8b0fec6
git_last_commit_date: 2026-04-28
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28
Packaged: 2026-04-28 21:50:06 UTC; biocbuild
Author: Jakob Peder Pettersen [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3485-1634>)
Maintainer: Jakob Peder Pettersen <jakobpeder.pettersen@gmail.com>
Built: R 4.6.0; aarch64-apple-darwin23; 2026-04-29 04:38:54 UTC; unix
