Analysis of OpenArray PCR Data

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Documentation for package ‘OAtools’ version 0.99.15

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package README

Help Pages

.buildServer	Web Server
.buildUI	User Interface
.runFitCurve	Run the fit_curve() function
.serverDataImport	Data Import Server
.serverFitCurves	Curve Fitting Server
.serverGraphics	Graphics Server
.serverReporting	Reporting Server
.uiDataImport	Data Import UI
.uiFitCurves	Curve Fitting UI
.uiGraphics	Graphics UI
.uiReporting	Reporting UI
buildApp	A Shiny App for OAtools
computeModels	Optimize 5PL models to OpenArray PCR data and save as metadata
determinePCRResults	Determine PCR results from fit curves
example_se	Example OpenArray Gene Expression Data Contained in a SummarizedExperiment
excelToSE	Convert OpenArray data from Excel to a Summarized Experiment
generateReport	Generate a PCR Report
oa_gene_expression_1	Example Raw OpenArray Gene Expression Data
oa_gene_expression_2	Example Raw OpenArray Gene Expression Data
plotCrt	Plot Relative Cycle Threshold Values by Gene
plotModel	Plot Fluorescence Values Predicted by Model
plotOverview	Plot Amplification Status by Sample and Gene
plotQC	Plot a 3D Quality Control Graphic from a SummarizedExperiment
seToQPCRBatch	Convert to qPCRBatch Object
target_threshold_key	Target Threshold Key