Package: GeoDiff
Type: Package
Title: Count model based differential expression and normalization on
        GeoMx RNA data
Version: 1.17.0
Authors@R: c(person("Nicole", "Ortogero", email = "nortogero@nanostring.com", role = c("cre")),
             person("Lei", "Yang", email = "lyang@nanostring.com", role = c("aut")), 
             person("Zhi", "Yang", email = "zyang@nanostring.com", role = c("aut")))
Description: A series of statistical models using count generating
        distributions for background modelling, feature and sample QC,
        normalization and differential expression analysis on GeoMx RNA
        data. The application of these methods are demonstrated by
        example data analysis vignette.
Imports: Matrix, robust, plyr, lme4, Rcpp (>= 1.0.4.6), withr, methods,
        graphics, stats, testthat, GeomxTools, NanoStringNCTools
LinkingTo: Rcpp, RcppArmadillo, roptim
License: MIT + file LICENSE
URL: https://github.com/Nanostring-Biostats/GeoDiff
BugReports: https://github.com/Nanostring-Biostats/GeoDiff
Encoding: UTF-8
Suggests: knitr, rmarkdown, dplyr
VignetteBuilder: knitr
Depends: R (>= 4.1.0), Biobase
RoxygenNote: 7.1.2
biocViews: GeneExpression, DifferentialExpression, Normalization
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev make libicu-dev libpng-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:13:32 UTC
RemoteUrl: https://github.com/bioc/GeoDiff
RemoteRef: HEAD
RemoteSha: 8ca4c17f90e1ec62029196bb8f34cb71e810cbcc
NeedsCompilation: yes
Packaged: 2026-02-03 09:36:09 UTC; root
Author: Nicole Ortogero [cre],
  Lei Yang [aut],
  Zhi Yang [aut]
Maintainer: Nicole Ortogero <nortogero@nanostring.com>
Built: R 4.6.0; aarch64-apple-darwin23; 2026-02-03 10:16:06 UTC; unix
