# Utilities for manipulating chromosome names, including modifying them to follow a particular naming style

## Documentation for package ‘GenomeInfoDb’ version 1.48.0

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

dropSeqlevels | Convenience wrappers to the seqlevels() getter and setter
extractSeqlevels | Conveniently rename the seqlevels of an object according to a given style
extractSeqlevelsByGroup | Conveniently rename the seqlevels of an object according to a given style
fetch_assembly_report | Utility functions to access NCBI resources
find_NCBI_assembly_ftp_dir | Utility functions to access NCBI resources
genomeBuilds | Mapping between UCSC and Ensembl Genome Builds
genomeStyles | Conveniently rename the seqlevels of an object according to a given style
getChromInfoFromEnsembl | Get chromosome information for an Ensembl species
getChromInfoFromNCBI | Get chromosome information for an NCBI assembly
getChromInfoFromUCSC | Get chromosome information for a UCSC genome
get_and_fix_chrom_info_from_UCSC | Get chromosome information for a UCSC genome
keepSeqlevels | Convenience wrappers to the seqlevels() getter and setter
keepStandardChromosomes | Convenience wrappers to the seqlevels() getter and setter
listOrganisms | Mapping between UCSC and Ensembl Genome Builds
loadTaxonomyDb | Return a data.frame that lists the known taxonomy IDs and their corresponding organisms.
mapGenomeBuilds | Mapping between UCSC and Ensembl Genome Builds
mapSeqlevels | Conveniently rename the seqlevels of an object according to a given style
NCBI-utils | Utility functions to access NCBI resources
registered_NCBI_assemblies | Get chromosome information for an NCBI assembly
registered_UCSC_genomes | Get chromosome information for a UCSC genome
renameSeqlevels | Convenience wrappers to the seqlevels() getter and setter
saveChromInfoFromNCBI | Get chromosome information for an NCBI assembly
saveChromInfoFromUCSC | Get chromosome information for a UCSC genome
seqlevels-wrappers | Convenience wrappers to the seqlevels() getter and setter
seqlevelsInGroup | Conveniently rename the seqlevels of an object according to a given style
seqlevelsStyle | Conveniently rename the seqlevels of an object according to a given style
seqlevelsStyle-method | Conveniently rename the seqlevels of an object according to a given style
seqlevelsStyle<- | Conveniently rename the seqlevels of an object according to a given style
seqlevelsStyle<--method | Conveniently rename the seqlevels of an object according to a given style
standardChromosomes | Convenience wrappers to the seqlevels() getter and setter