# Gene Ontology enrichment analysis of gene pairs

## Documentation for package ‘GOaGO’ version 1.0.1

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

annotateAnchors | Associate interaction anchors to the nearest TSSes
annotateInteractions | Associate interactions to gene pairs
as.data.frame | Coerce a 'GOaGO-result' object to a data frame
as.data.frame-method | Coerce a 'GOaGO-result' object to a data frame
convertTranscriptsToTSS | Convert gene transcripts to Transcription Start Sites
DotPlot | Dotplot of the enriched Gene Ontology terms
genePairs | Accessors and show method for 'GOaGO-result' objects
genePairsGM12878 | Gene pairs associated with chromatin loops in GM12878 cell line
GOaGO | Gene Ontology enrichment analysis in a set of gene pairs
GOaGO-accessors | Accessors and show method for 'GOaGO-result' objects
GOaGO-result-class | An S4 class to represent the results of GO-a-GO enrichment analysis
keyType | Accessors and show method for 'GOaGO-result' objects
organism | Accessors and show method for 'GOaGO-result' objects
organism-method | Accessors and show method for 'GOaGO-result' objects
RidgePlot | Ridgeplot of the sampling distributions for the randomized gene pairs
show | Accessors and show method for 'GOaGO-result' objects
show-method | Accessors and show method for 'GOaGO-result' objects
termGenePairs | Extract the enriched Gene Ontology terms along with gene pairs sharing them
uniqueGenePairs | Extract unique gene pairs from the data frame provided