Package: regioneR
Type: Package
Title: Association analysis of genomic regions based on permutation
        tests
Version: 1.43.0
Date: 2025-06-20
Author: Anna Diez-Villanueva <adiez@iconcologia.net>, Roberto
        Malinverni <roberto.malinverni@gmail.com> and Bernat Gel
        <bgel@igtp.cat>
Maintainer: Bernat Gel <bgel@imppc.org>
Description: regioneR offers a statistical framework based on
        customizable permutation tests to assess the association
        between genomic region sets and other genomic features.
License: Artistic-2.0
Depends: GenomicRanges
Imports: memoise, GenomicRanges, IRanges, BSgenome, Biostrings,
        rtracklayer, parallel, graphics, stats, utils, methods,
        Seqinfo, GenomeInfoDb, S4Vectors, tools
Suggests: BiocStyle, knitr, rmarkdown,
        BSgenome.Hsapiens.UCSC.hg19.masked, testthat
VignetteBuilder: knitr
Encoding: UTF-8
biocViews: Genetics, ChIPSeq, DNASeq, MethylSeq, CopyNumberVariation
NeedsCompilation: no
RoxygenNote: 7.3.2
Config/pak/sysreqs: make libbz2-dev liblzma-dev libxml2-dev libssl-dev
        xz-utils zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:25:09 UTC
RemoteUrl: https://github.com/bioc/regioneR
RemoteRef: HEAD
RemoteSha: a9f7f214681c226262cde17474d54cf574a016e5
Packaged: 2026-01-22 20:27:03 UTC; root
Built: R 4.6.0; ; 2026-01-22 21:14:17 UTC; unix
