Package: phantasus
Title: Visual and interactive gene expression analysis
Version: 1.31.2
Authors@R: c(
    person("Maxim", "Kleverov", role = "aut"),        
    person("Daria", "Zenkova", role = "aut"),
    person("Vladislav", "Kamenev", role = "aut"),        
    person("Margarita", "Sablina", role = "ctb"),        
    person("Maxim", "Artyomov", role = "aut"),
    person("Alexey", "Sergushichev", email = "alsergbox@gmail.com", role = c("aut", "cre")))
Description: Phantasus is a web-application for visual and interactive
        gene expression analysis. Phantasus is based on Morpheus – a
        web-based software for heatmap visualisation and analysis,
        which was integrated with an R environment via OpenCPU API.
        Aside from basic visualization and filtering methods, R-based
        methods such as k-means clustering, principal component
        analysis or differential expression analysis with limma package
        are supported.
URL: https://alserglab.wustl.edu/phantasus
BugReports: https://github.com/ctlab/phantasus/issues
Depends: R (>= 4.3)
biocViews: GeneExpression, GUI, Visualization, DataRepresentation,
        Transcriptomics, RNASeq, Microarray, Normalization, Clustering,
        DifferentialExpression, PrincipalComponent, ImmunoOncology
Imports: ggplot2, protolite, Biobase, GEOquery, htmltools, httpuv,
        jsonlite, limma, edgeR, opencpu, assertthat, methods, httr,
        rhdf5, utils, parallel, stringr, fgsea (>= 1.9.4), svglite,
        gtable, stats, Matrix, pheatmap, scales, ccaPP, grid,
        grDevices, AnnotationDbi, DESeq2, data.table, curl, apeglm,
        config (>= 0.3.2), rhdf5client (>= 1.25.1), yaml, fs,
        phantasusLite, XML
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.3
Suggests: testthat, BiocStyle, knitr, rmarkdown, org.Hs.eg.db,
        org.Mm.eg.db
VignetteBuilder: knitr
NeedsCompilation: no
Config/build/copy-method: link
Config/pak/sysreqs: libapparmor-dev cmake libfontconfig1-dev
        libfreetype6-dev libfribidi-dev git make libharfbuzz-dev
        libicu-dev libpng-dev libprotobuf-dev libuv1-dev libxml2-dev
        libssl-dev protobuf-compiler libprotoc-dev libx11-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-08 16:32:58 UTC
RemoteUrl: https://github.com/bioc/phantasus
RemoteRef: HEAD
RemoteSha: c06abfbec7176e77371aae1db95a061a1e4a46cd
Packaged: 2026-04-09 06:24:36 UTC; root
Author: Maxim Kleverov [aut],
  Daria Zenkova [aut],
  Vladislav Kamenev [aut],
  Margarita Sablina [ctb],
  Maxim Artyomov [aut],
  Alexey Sergushichev [aut, cre]
Maintainer: Alexey Sergushichev <alsergbox@gmail.com>
Built: R 4.6.0; ; 2026-04-09 06:27:22 UTC; unix
