Package: miRSM
Type: Package
Title: Inferring miRNA sponge modules in heterogeneous data
Version: 2.8.0
Authors@R: 
    person(given = "Junpeng", 
           family = "Zhang", 
           role=c("aut", "cre"), 
           email = "zjp@dali.edu.cn")
Description: The package aims to identify miRNA sponge or ceRNA modules
        in heterogeneous data. It provides several functions to study
        miRNA sponge modules at single-sample and multi-sample levels,
        including popular methods for inferring gene modules (candidate
        miRNA sponge or ceRNA modules), and two functions to identify
        miRNA sponge modules at single-sample and multi-sample levels,
        as well as several functions to conduct modular analysis of
        miRNA sponge modules.
Depends: R (>= 4.4.0)
License: GPL-3
URL: https://github.com/zhangjunpeng411/miRSM
Encoding: UTF-8
biocViews: GeneExpression, BiomedicalInformatics, Clustering,
        GeneSetEnrichment, Microarray, Software, GeneRegulation,
        GeneTarget
RoxygenNote: 7.3.2
Imports: WGCNA, flashClust, dynamicTreeCut, GFA, igraph, RColorBrewer,
        grid, MCL, fabia, NMF, BicARE, isa2, methods, rJava, Biobase,
        PMA, stats, dbscan, mclust, SOMbrero, ppclust, Rcpp, utils,
        SummarizedExperiment, GSEABase, org.Hs.eg.db, clusterProfiler,
        ReactomePA, DOSE, MatrixCorrelation, energy
Suggests: BiocStyle, knitr, rmarkdown, testthat
VignetteBuilder: knitr
BugReports: https://github.com/zhangjunpeng411/miRSM/issues
Config/pak/sysreqs: libabsl-dev libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libgdal-dev gdal-bin libgeos-dev libglpk-dev
        make libgsl0-dev default-jdk libicu-dev libjpeg-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev libproj-dev libsqlite3-dev
        libudunits2-dev zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:48:35 UTC
RemoteUrl: https://github.com/bioc/miRSM
RemoteRef: RELEASE_3_23
RemoteSha: 2b955eb1711b0389e100a7340c2729782c6b8791
NeedsCompilation: yes
Packaged: 2026-04-29 23:27:24 UTC; root
Author: Junpeng Zhang [aut, cre]
Maintainer: Junpeng Zhang <zjp@dali.edu.cn>
Built: R 4.6.0; x86_64-apple-darwin20; 2026-04-29 23:34:42 UTC; unix
