Package: iSEEde
Title: iSEE extension for panels related to differential expression
        analysis
Version: 1.9.0
Date: 2024-10-01
Authors@R: 
    c(person("Kevin", "Rue-Albrecht", email = "kevinrue67@gmail.com",
             role = c("aut", "cre"),
             comment = c(ORCID = "0000-0003-3899-3872")),
    person("Thomas", "Sandmann", email = "tomsing1@gmail.com",
             role = c("ctb"),
             comment = c(ORCID = "0000-0002-6601-8890")),
    person("Denali Therapeutics", role = c("fnd")))
Description: This package contains diverse functionality to extend the
        usage of the iSEE package, including additional classes for the
        panels or modes facilitating the analysis of differential
        expression results. This package does not perform differential
        expression. Instead, it provides methods to embed precomputed
        differential expression results in a SummarizedExperiment
        object, in a manner that is compatible with interactive
        visualisation in iSEE applications.
License: Artistic-2.0
URL: https://github.com/iSEE/iSEEde
BugReports: https://support.bioconductor.org/t/iSEEde
biocViews: Software, Infrastructure, DifferentialExpression
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.2.3
Depends: iSEE
Imports: DESeq2, edgeR, methods, S4Vectors, shiny, SummarizedExperiment
Suggests: airway, BiocStyle, covr, knitr, limma, org.Hs.eg.db,
        RefManageR, rmarkdown, scuttle, sessioninfo, statmod, testthat
        (>= 3.0.0)
Config/testthat/edition: 3
VignetteBuilder: knitr
Config/pak/sysreqs: libglpk-dev make libpng-dev libxml2-dev perl
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 15:24:44 UTC
RemoteUrl: https://github.com/bioc/iSEEde
RemoteRef: HEAD
RemoteSha: b1d08fe0e0aba3a68600a701819be1a25da1047e
NeedsCompilation: no
Packaged: 2026-01-09 21:26:48 UTC; root
Author: Kevin Rue-Albrecht [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-3899-3872>),
  Thomas Sandmann [ctb] (ORCID: <https://orcid.org/0000-0002-6601-8890>),
  Denali Therapeutics [fnd]
Maintainer: Kevin Rue-Albrecht <kevinrue67@gmail.com>
Built: R 4.6.0; ; 2026-01-09 22:11:16 UTC; unix
