addCategory             Add a categorical column to a data frame based
                        on another column
addMetadataCategory     Add a categorical column to a Seurat metadata
                        or SingleCellExperiment coldata
addNormSilhouette       Adds normalized silhouette column to a
                        single-cell expression object
centerOfMass            Calculate the center of mass of columns
checkGenes              Check if all genes exist in the single-cell
                        expression object
colCenters              Calculate the centers of mass of
                        metadata/coldata columns
colsDimPlot             Create a single-cell dimensionality reduction
                        plot with added labeled points for numeric
                        columns
computeSilhouette       Compute cluster silhouette for single-cell
                        expression object
devPlot.default         Saves plot or list of plots
distributionPlot        Plot the distribution of cells across two
                        columns
findRareGenes           Find rare genes in a Seurat or
                        SingleCellExpression object
geneCellSets            Generates cell sets for each input gene
geneCenters             Calculate the centers of mass of the expression
                        of input genes
genePresence            Extract gene presence from a Seurat or
                        SingleCellExperiment object
genesDimPlot            Create a single-cell dimensionality reduction
                        plot with added labeled points for genes
joinCharCombs           Join all combinations of elements from
                        character vectors
keyvalMap               Create a map from keys to values
normalizeSilhouette     Normalize silhouette by identity class for
                        single-cell expression object
pointsDimPlot           Create a single-cell dimensionality reduction
                        plot with added labeled points
prepAlluvial            Prepare dataframe for alluvial plot
pvalRiverPlot           Plot representation data frame
removeRareGenes         Remove rare genes from a Seurat or
                        SingleCellExpression object
repAnalysis             Find the differential representation of two
                        Seurat or SingleCellExperiment columns
safeMessage             Message an input if verbose is set to TRUE
safeMinmax              Perform min-max normalization when possible;
                        otherwise return a single-value vector.
