Package: fgsea
Title: Fast Gene Set Enrichment Analysis
Version: 1.38.0
Authors@R: c(person("Gennady", "Korotkevich", role = "aut"),
             person("Vladimir", "Sukhov", role = "aut"),
             person("Nikita", "Golikov", role = "aut"),
             person("Nikolay", "Budin", role = "ctb"),
             person("Nikita", "Gusak", role = "ctb"),
             person("Zieman", "Mark", role = "ctb"),
			 person("Alexey", "Sergushichev", email = "alsergbox@gmail.com", role = c("aut", "cre")))
Description: The package implements an algorithm for fast gene set
        enrichment analysis. Using the fast algorithm allows to make
        more permutations and get more fine grained p-values, which
        allows to use accurate stantard approaches to multiple
        hypothesis correction.
biocViews: GeneExpression, DifferentialExpression, GeneSetEnrichment,
        Pathways
Depends: R (>= 4.1)
Imports: Rcpp, data.table, BiocParallel, stats, ggplot2 (>= 2.2.0),
        cowplot, grid, fastmatch, Matrix, scales, utils
Suggests: testthat, knitr, rmarkdown, reactome.db, AnnotationDbi,
        parallel, org.Mm.eg.db, limma, GEOquery, msigdbr, aggregation,
        Seurat
License: MIT + file LICENCE
LazyData: true
LinkingTo: Rcpp, BH
RoxygenNote: 7.3.3
Encoding: UTF-8
VignetteBuilder: knitr
URL: https://github.com/alserglab/fgsea/
BugReports: https://github.com/alserglab/fgsea/issues
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 12:43:45 UTC
RemoteUrl: https://github.com/bioc/fgsea
RemoteRef: RELEASE_3_23
RemoteSha: 1fe46448457d30235f6de4ab963026aed4a8edf0
NeedsCompilation: yes
Packaged: 2026-05-05 09:27:47 UTC; root
Author: Gennady Korotkevich [aut],
  Vladimir Sukhov [aut],
  Nikita Golikov [aut],
  Nikolay Budin [ctb],
  Nikita Gusak [ctb],
  Zieman Mark [ctb],
  Alexey Sergushichev [aut, cre]
Maintainer: Alexey Sergushichev <alsergbox@gmail.com>
Built: R 4.6.0; x86_64-apple-darwin20; 2026-05-05 09:32:49 UTC; unix
