epiRomics-package	epiRomics-package
analyze_tf_cobinding	analyze_tf_cobinding
analyze_tf_overlap	analyze_tf_overlap
annotate_enhancers	annotate_enhancers
annotations	annotations
annotations,epiRomicsS4-method	annotations
annotations-set	annotations-set
annotations<-	annotations-set
annotations<-,epiRomicsS4-method	annotations-set
benchmark_enhancer_predictor	benchmark_enhancer_predictor
build_database	build_database
cache_data	cache_data
call_accessible_regions	call_accessible_regions
chromatin_state_categories	chromatin_state_categories
classify_celltype_accessibility	classify_celltype_accessibility
classify_chromatin_states	classify_chromatin_states
epiRomics	epiRomics-package
epiRomics-deprecated	epiRomics-deprecated
epiRomicsS4	epiRomicsS4-class
epiRomicsS4-accessors	epiRomicsS4-accessors
epiRomicsS4-class	epiRomicsS4-class
epiRomics_annotate_putative	epiRomics-deprecated
epiRomics_build_dB	epiRomics-deprecated
epiRomics_cache_data	epiRomics-deprecated
epiRomics_cache_path	epiRomics-deprecated
epiRomics_chromatin_states	epiRomics-deprecated
epiRomics_chromatin_states_categories	epiRomics-deprecated
epiRomics_enhanceosome	epiRomics-deprecated
epiRomics_enhancers_co_marks	epiRomics-deprecated
epiRomics_enhancers_filter	epiRomics-deprecated
epiRomics_enhancer_predictor_to_ref	epiRomics-deprecated
epiRomics_filter_accessible	epiRomics-deprecated
epiRomics_has_cache	epiRomics-deprecated
epiRomics_putative_enhancers	epiRomics-deprecated
epiRomics_quick_view	epiRomics-deprecated
epiRomics_regions_of_interest	epiRomics-deprecated
epiRomics_tf_cobinding	epiRomics-deprecated
epiRomics_tf_overlap	epiRomics-deprecated
epiRomics_track_layer	epiRomics-deprecated
epiRomics_track_layer_fast	epiRomics-deprecated
epiRomics_track_layer_gene	epiRomics-deprecated
filter_accessible_regions	filter_accessible_regions
filter_enhancers	filter_enhancers
find_enhanceosomes	find_enhanceosomes
find_enhancers_by_comarks	find_enhancers_by_comarks
find_putative_enhancers	find_putative_enhancers
genome	genome
genome,epiRomicsS4-method	genome
genome-set	genome-set
genome<-	genome-set
genome<-,epiRomicsS4-method	genome-set
get_cache_path	get_cache_path
get_regions_of_interest	get_regions_of_interest
has_cache	has_cache
make_example_bigwig	make_example_bigwig
make_example_database	make_example_database
make_example_enhanceosome	make_example_enhanceosome
make_example_putative_enhancers	make_example_putative_enhancers
maxCovBwCached	maxCovBwCached
maxCovFilesCached	maxCovFilesCached
meta	meta
meta,epiRomicsS4-method	meta
meta-set	meta-set
meta<-	meta-set
meta<-,epiRomicsS4-method	meta-set
organism	organism
organism,epiRomicsS4-method	organism
organism-set	organism-set
organism<-	organism-set
organism<-,epiRomicsS4-method	organism-set
plot_gene_tracks	plot_gene_tracks
plot_quick_view	plot_quick_view
plot_signal_histogram	plot_signal_histogram
plot_tracks	plot_tracks
plot_tracks_fast	plot_tracks
txdb	txdb
txdb,epiRomicsS4-method	txdb
txdb-set	txdb-set
txdb<-	txdb-set
txdb<-,epiRomicsS4-method	txdb-set
