Package: decemedip
Title: hierarchical Bayesian modeling for cell type deconvolution of
        immunoprecipitation-based DNA methylome
Version: 1.0.0
Authors@R: 
    person("Ning", "Shen", , "ning.shen.wk@gmail.com", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0002-2974-1086"))
Description: The R package decemedip is a novel computational paradigm
        developed for inferring the relative abundances of cell types
        and tissues measure by methylated DNA immunoprecipitation
        sequencing (MeDIP-Seq). This paradigm allows using reference
        data from other technologies such as microarray or WGBS.
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: false
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
biocViews: Software, ImmunoOncology, DNAMethylation, Epigenetics,
        Sequencing, WholeGenome
Biarch: true
Depends: R (>= 4.5.0)
Imports: bayesplot, cowplot, dplyr, GenomicRanges, ggplot2, IRanges,
        magrittr, Matrix, matrixStats, MEDIPS, methods, purrr, R.utils,
        Rcpp, RcppParallel, rlang, rstan, rstantools, S4Vectors,
        SummarizedExperiment
LinkingTo: BH (>= 1.66.0), Rcpp (>= 0.12.0), RcppEigen (>= 0.3.3.3.0),
        RcppParallel (>= 5.0.1), rstan (>= 2.18.1), StanHeaders (>=
        2.18.0)
SystemRequirements: GNU make
Suggests: knitr, rmarkdown, BiocStyle, devtools, testthat (>= 3.0.0)
VignetteBuilder: knitr
Config/testthat/edition: 3
URL: https://github.com/nshen7/decemedip
BugReports: https://github.com/nshen7/decemedip/issues
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2026-04-28 13:06:10 UTC
RemoteUrl: https://github.com/bioc/decemedip
RemoteRef: RELEASE_3_23
RemoteSha: 9e545b64f22a640f324b370b517a8bc1d791a504
NeedsCompilation: yes
Packaged: 2026-04-29 20:59:13 UTC; root
Author: Ning Shen [aut, cre] (ORCID: <https://orcid.org/0000-0002-2974-1086>)
Maintainer: Ning Shen <ning.shen.wk@gmail.com>
Built: R 4.6.0; x86_64-apple-darwin20; 2026-04-29 21:31:59 UTC; unix
