Improved ChromVAR (Chromatin Variation Across Regions)
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Documentation for package ‘betterChromVAR’ version 0.99.41
Help Pages
| addGCBias | addGCBias |
| as.list-method | Coerce bcvBackground to a list |
| bcvBackground-class | Bin and background data for betterChromVAR (for internal use) |
| betterChromVAR | betterChromVAR |
| computeBackgrounds | computeBackgrounds |
| computeDeviationsAnalytic | computeDeviationsAnalytic |
| CVnorm | CVnorm: chromVAR-inspired ATAC-seq normalization |
| getBackgroundBins | getBackgroundBins |
| getDummyData | Dummy data for testing purposes |
| getExpectation | getExpectation |
| normalizeDevsForSize | normalizeDevsForSize |
| sampleBackgroundPeaks | sampleBackgroundPeaks |
| show-method | Coerce bcvBackground to a list |
| shrinkColumnProps | shrinkColumnProps |
| [-method | Coerce bcvBackground to a list |