Call CNV from single cell ATAC-seq data based on InferCNV adaptation

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Documentation for package ‘atacInferCnv’ version 0.99.7

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

atacInferCnv-package	atacInferCnv: CNV inference from single-cell chromatin accessibility data
aggregateBins	Combine ATAC signals across bins of specific size
atacInferCnv	atacInferCnv: CNV inference from single-cell chromatin accessibility data
extractMetacells	Compute meta-cells out of the main
plotCnvBlocks	Function to plot CNV blocks
prepareAtacInferCnvInput	Prepare input for the CNV calling from scATAC-seq data
runAtacInferCnv	Wrapper function to run InferCNV calling
writeConfig	Write InferCNV configuration