# Generated by roxygen2: do not edit by hand

export(plotCnvBlocks)
export(prepareAtacInferCnvInput)
export(runAtacInferCnv)
import(GenomicRanges)
import(Seurat)
import(Signac)
import(SingleCellExperiment)
import(ggplot2)
import(grDevices)
import(graphics)
import(infercnv)
import(stringr)
importFrom(GenomeInfoDb,keepSeqlevels)
importFrom(Rcpp,sourceCpp)
importFrom(S4Vectors,queryHits)
importFrom(S4Vectors,subjectHits)
importFrom(SummarizedExperiment,assay)
importFrom(SummarizedExperiment,colData)
importFrom(config,get)
importFrom(stats,cutree)
importFrom(utils,capture.output)
importFrom(utils,read.delim)
importFrom(utils,read.table)
importFrom(utils,write.csv)
importFrom(utils,write.table)
useDynLib(atacInferCnv, .registration=TRUE)
