# TaxSEA News

# TaxSEA 1.3.3

- Add `ssTaxSEA()` function for single sample enrichment testing and documentation

# TaxSEA 1.3.2

- Add `taxon_rank_sets()` helper with documentation and tests
- Add functionality to interact with tse objects

## TaxSEA 1.3.1

- Internal refactor to modular analysis pipeline 
- Added infrastructure for over-representation analysis (ORA).
- Improved internal input preparation and validation.

## Version 1.1.8 (2025-08-12)
- Added output for all taxon sets 
- Fixed spelling in GutMGene_producers_of_Phenyalanine

## Version 1.1.7 (2025-08-11)  
- Added Gut-Brain modules database from Valles-Colomer et al.
Nature Microbiology. 2019. 

## Version 1.1.6 (2025-08-08)  
- Bug fixes

## Version 1.1.5 (2025-08-06)
- Fixed bug in BacDive Database

## Version 1.1.4 (2025-08-05)
- Added BacDive Database
- Added Blossum and VANISH taxon sets in disease associations category

## Version 0.99.2 (2025-02-20)
- Added ability to test custom taxon sets using `custom_db` parameter.
- Removed deprecated `plotting.R` file.
- TaxSEA now reports the KS test statistic for each taxon set.

## Version 0.99.1 (2025-02-11)
- Bringing into line with requirements for BioConductor submission
