Identification and Classification of Spatial Artifacts in Visium and Visium HD Data

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Documentation for package ‘SpatialArtifacts’ version 0.99.10

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

SpatialArtifacts-package	SpatialArtifacts: Detect and Classify Spatial Artifacts
classifyEdgeArtifacts	Classify Edge Artifacts into Hierarchical Categories
clumpEdges	Detect edge dryspots using spatial clustering
detectEdgeArtifacts	Unified Edge Artifact Detection
detectEdgeArtifacts_Visium	Detect edge artifacts in spatial transcriptomics data
detectEdgeArtifacts_VisiumHD	Detect Edge Artifacts in VisiumHD Data
focal_transformations	Apply morphological transformations to identify connected outlier regions
focal_transformations_terra	Morphological transformations using terra (optimized for VisiumHD)
problemAreas	Identify all problem areas in spatial transcriptomics data
problemAreas_WithMorphology_terra	Detect problem areas in VisiumHD data using morphological processing
SpatialArtifacts	SpatialArtifacts: Detect and Classify Spatial Artifacts
spe_vignette	Example SpatialExperiment for Vignettes