@article{Bhuva2024,
  title={Library size confounds biology in spatial transcriptomics data},
  author={Bhuva, Dharmesh D and Tan, Chin Wee and Salim, Agus and Marceaux, Claire and Pickering, Marie A and Chen, Jinjin and Kharbanda, Malvika and Jin, Xinyi and Liu, Ning and Feher, Kristen and Putri, Givanna and Tilley, Wayne D and Hickey, Theresa E and Asselin-Labat, Marie-Liesse and Phipson, Belinda and Davis, Melissa J},
  journal={Genome Biology},
  volume={25},
  number={1},
  pages={99},
  year={2024},
  publisher={Springer}
}

@article {Atta2023,
	author = {Lyla Atta and Kalen Clifton and Manjari Anant and Gohta Aihara and Jean Fan},
	title = {Gene count normalization in single-cell imaging-based spatially resolved transcriptomics},
	elocation-id = {2023.08.30.555624},
	year = {2024},
	doi = {10.1101/2023.08.30.555624},
	publisher = {Cold Spring Harbor Laboratory},	
	URL = {https://www.biorxiv.org/content/early/2024/03/06/2023.08.30.555624},
	eprint = {https://www.biorxiv.org/content/early/2024/03/06/2023.08.30.555624.full.pdf},
	journal = {bioRxiv}
}

@article{Salim2022,
    author = {Salim, Agus and Molania, Ramyar and Wang, Jianan and De Livera, Alysha and Thijssen, Rachel and Speed, Terence P},
    title = "{RUV-III-NB: normalization of single cell RNA-seq data}",
    journal = {Nucleic Acids Research},
    volume = {50},
    number = {16},
    pages = {e96-e96},
    year = {2022},
    month = {06},
    issn = {0305-1048},
    doi = {10.1093/nar/gkac486},
    url = {https://doi.org/10.1093/nar/gkac486},
    eprint = {https://academic.oup.com/nar/article-pdf/50/16/e96/45735751/gkac486.pdf},
}

@article{Maynard2021,
  title={Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex},
  author={Maynard, Kristen R and Collado-Torres, Leonardo and Weber, Lukas M and Uytingco, Cedric and Barry, Brianna K and Williams, Stephen R and Catallini, Joseph L and Tran, Matthew N and Besich, Zachary and Tippani, Madhavi and others},
  journal={Nature neuroscience},
  volume={24},
  number={3},
  pages={425--436},
  year={2021},
  publisher={Nature Publishing Group US New York}
}

@article{Townes2019,
  title={Feature selection and dimension reduction for single-cell RNA-Seq based on a multinomial model},
  author={Townes, F William and Hicks, Stephanie C and Aryee, Martin J and Irizarry, Rafael A},
  journal={Genome biology},
  volume={20},
  pages={1--16},
  year={2019},
  publisher={Springer}
}