calculateCoverageProfile	calculateCoverageProfile
calculateCoverageProfileFromTxdb	calculateCoverageProfileFromTxdb
calculateCoverageProfileList	calculateCoverageProfileList
calculateCoverageProfileListFromTxdb	calculateCoverageProfileListFromTxdb
checkSeqDb	checkSeqDb
createControlRegions	createControlRegions
createDB	createDB
createOrthologousGeneSetList	createOrthologousGeneSetList
deleteSampleDataFromDB	deleteSampleDataFromDB
discoverFeatureSpecificMotifs	discoverFeatureSpecificMotifs
extractSequences	extractSequences
findDifferentialMotifs	findDifferentialMotifs
findEnrichedFunctions	findEnrichedFunctions
generateKmers	generateKmers
getFeatureBoundaryCoverage	getFeatureBoundaryCoverage
getFeatureBoundaryCoverageBin	getFeatureBoundaryCoverageBin
getFeatureBoundaryCoverageMulti	getFeatureBoundaryCoverageMulti
getIntervalOverlapMatrix	getIntervalOverlapMatrix
getMotifSummaryTable	getMotifSummaryTable
getPWM	getPWM
getTargetedGenesTable	getTargetedGenesTable
getTxdbFeatures	getTxdbFeatures
getTxdbFeaturesFromGRanges	getTxdbFeaturesFromGRanges
gff	gff
importBed	importBed
importBedFiles	importBedFiles
importGtf	importGtf
parseMsigdb	parseMsigdb
plotFeatureBoundaryCoverage	plotFeatureBoundaryCoverage
printMsigdbDataset	printMsigdbDataset
queryGff	queryGff
queryRegions	queryRegions
retrieveOrthologs	retrieveOrthologs
runGSEA	runGSEA
runMotifDiscovery	runMotifDiscovery
runMotifRG	runMotifRG
runReport	runReport
runReportMetaAnalysis	runReportMetaAnalysis
runTopGO	runTopGO
summarizeDatabaseContent	summarizeDatabaseContent
summarizeQueryRegions	summarizeQueryRegions
summarizeQueryRegionsMulti	summarizeQueryRegionsMulti
