acetaminophen           MetaboAnnotatoR fragment database entry for
                        Acetaminophen Positive mode
annotateAIF             Annotate features from LC-MS AIF raw
                        chromatograms
annotateRC              Annotate features from LC-MS AIF datasets
                        processed with RAMClustR
checkIsotope            Isotopologue type determination
compFrag                Match (pseudo-)MS/MS spectra ions to library
                        fragments
genFragEntry            Generate a fragment library entry
getPseudoMSMS           Obtain pseudo-MS/MS spectra for an LC-MS
                        feature of interest
LipidNeg                MetaboAnnotatoR Lipid Negative fragment
                        libraries
LipidPos                MetaboAnnotatoR Lipid Positive fragment
                        libraries
MetabolitesNeg          MetaboAnnotatoR Metabolite Negative fragment
                        libraries
MetabolitesPos          MetaboAnnotatoR Metabolite Positive fragment
                        libraries
mspToLib                Generate metabolite entries from MS/MS spectra
                        (.msp files)
plotResultSpec          Plot pseudo-MS/MS composed of candidate matched
                        ions
pseudoMSMS              MetaboAnnotatoR-generated example pseudoMSMS
                        spectrum and related data
rankScore               Rank candidate metabolite annotations by score
RC                      Pseudo-MS/MS spectra from MESA Lipid Positive
                        LC-MS serum samples
rCandidates             MetaboAnnotatoR-generated example of ranked
                        annotation candidates
RCspec                  Get RAMClustR pseudo-MS/MS spectra (cluster).
saveAnnotations         Save annotation results
searchLib               Search candidate metabolites from the fragments
                        libraries
xcmsSpec                Extract the low- and high-collision-energy
                        spectra from XCMS object (from AIF data)
xset                    MESA cohort subset Lipid Positive LC-MS samples
                        processed using XCMS
