Network Analysis for MS-based Proteomics Experiments

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Documentation for package ‘MSstatsBioNet’ version 1.3.6

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

.populateHgncIdsInDataFrame	Populate HGNC IDs in Data Frame
.populateHgncNamesInDataFrame	Populate HGNC Names in Data Frame
.populateKinaseInfoInDataFrame	Populate Kinase Info in Data Frame
.populatePhophataseInfoInDataFrame	Populate Phosphatase Info in Data Frame
.populateTranscriptionFactorInfoInDataFrame	Populate Transcription Factor Info in Data Frame
.populateUniprotIdsInDataFrame	Populate Uniprot IDs in Data Frame
.validateAnnotateProteinInfoFromIndraInput	Validate Annotate Protein Info Input
annotateProteinInfoFromIndra	Annotate Protein Information from Indra
cytoscapeNetwork	Render a Cytoscape network visualisation
cytoscapeNetworkOutput	Shiny output binding for cytoscapeNetwork
deleteEdgeFromNetwork	Delete an edge from a network edges data frame
exportNetworkToHTML	Export network data with Cytoscape visualization
filterSubnetworkByContext	Filter a subnetwork by contextual relevance
getSubnetworkFromIndra	Get subnetwork from INDRA database
previewNetworkInBrowser	Preview network in browser
renderCytoscapeNetwork	Render a Cytoscape network in a Shiny application. This function is used to render a Cytoscape network visualization within a Shiny application.