# Deconvolution of Heterogeneous Tissue Samples for mRNA-Seq data

## Documentation for package ‘DeconRNASeq’ version 1.53.0

- DESCRIPTION file.
- Code demos. Use demo() to run them.

## Help Pages

all.datasets | data objects for rat liver_brain samples
array.proportions | proportions for rat liver and brain mixing samples
array.signatures | data objects for rat liver and brain pure samples
condplot | Draw the plot of the condition numbers vs. the number of genes in the signature matrix
datasets | data objects for liver and kidney mixing samples
decon.bootstrap | Estimate the confidence interval for the proportions predicted by deconvolution
DeconRNASeq | Function for Deconvolution of Complex Samples from RNA-Seq.
DeconRNASeq.package | package DeconRNASeq contains function "DeconRNASeq", implementing the decomposition of RNA-Seq expression profilings of heterogeneous tissues into cell/tissue type specific expression and cell type concentration based on cell-type-specific reference measurements.
DeconRNASeq_package | package DeconRNASeq contains function "DeconRNASeq", implementing the decomposition of RNA-Seq expression profilings of heterogeneous tissues into cell/tissue type specific expression and cell type concentration based on cell-type-specific reference measurements.
fraction | mixing fractions for multi-tissues mixing samples
liver_kidney | data objects for liver and kidney mixing samples
multiplot | Draw the plots of proportions of cells determined from deconvolution vs. proportions of the cells actually mixed (when available) with RMSE.
multi_tissue | data objects for multi-tissues mixing samples
proportions | proportions for liver and kidney mixing samples
rmse | Calculate the differences between proportions predicted by deconvolution and the values actually measured
signatures | data objects for liver and kidney pure samples
x.data | data objects for multi-tissues mixing samples
x.signature | data objects for multi-tissues pure samples
x.signature.filtered | filtered signatures for multi-tissues pure samples
x.signature.filtered.optimal | selected signatures from multi-tissues pure samples