DMRcaller-package	DMRcaller
analyseReadsInsideRegionsForCondition	analyseReadsInsideRegionsForCondition
analyseReadsInsideRegionsForConditionPMD	analyseReadsInsideRegionsForConditionPMD
computeCoMethylatedPositions	computeCoMethylatedPositions
computeCoMethylatedRegions	computeCoMethylatedRegions
computeDMRs	computeDMRs
computeDMRsReplicates	computeDMRsReplicates
computeMethylationDataCoverage	computeMethylationDataCoverage
computeMethylationDataSpatialCorrelation	computeMethylationDataSpatialCorrelation
computeMethylationProfile	computeMethylationProfile
computeOverlapProfile	computeOverlapProfile
computePMDs	computePMDs
computeVMDs	computeVMDs
DMRcaller	DMRcaller
DMRsNoiseFilterCG	DMRsNoiseFilterCG
extractGC	extractGC
filterDMRs	filterDMRs
filterPMDs	filterPMDs
filterVMDs	filterVMDs
filterVMRsONT	filterVMRsONT
GEs	GEs
GEs_hg38	GEs_hg38
getWholeChromosomes	getWholeChromosomes
joinReplicates	joinReplicates
mergeDMRsIteratively	mergeDMRsIteratively
mergePMDsIteratively	mergePMDsIteratively
methylationDataList	methylationDataList
ontSampleGRangesList	ontSampleGRangesList
ont_gr_GM18870_chr1_PMD_bins_1k	ont_gr_GM18870_chr1_PMD_bins_1k
ont_gr_GM18870_chr1_sorted_bins_1k	ont_gr_GM18870_chr1_sorted_bins_1k
plotLocalMethylationProfile	plotLocalMethylationProfile
plotMethylationDataCoverage	plotMethylationDataCoverage
plotMethylationDataSpatialCorrelation	plotMethylationDataSpatialCorrelation
plotMethylationProfile	plotMethylationProfile
plotMethylationProfileFromData	plotMethylationProfileFromData
plotOverlapProfile	plotOverlapProfile
PMDsBinsCG	PMDsBinsCG
PMDsNoiseFilterCG	PMDsNoiseFilterCG
poolMethylationDatasets	poolMethylationDatasets
poolTwoMethylationDatasets	poolTwoMethylationDatasets
readBismark	readBismark
readBismarkPool	readBismarkPool
readONTbam	readONTbam
saveBismark	saveBismark
scanBamChr1Random5	scanBamChr1Random5
selectCytosine	selectCytosine
syntheticDataReplicates	syntheticDataReplicates
