Package: CluMSID
Type: Package
Title: Clustering of MS2 Spectra for Metabolite Identification
Version: 1.27.0
Authors@R: c(person("Tobias", "Depke", email = "depke@mailbox.org", 
    role = c("aut", "cre")),
    person("Raimo", "Franke", email = "raimo.franke@helmholtz-hzi.de",
    role = "ctb"),
    person("Mark", "Broenstrup", email = "mark.broenstrup@helmholtz-hzi.de",
    role = "ths"))
Maintainer: Tobias Depke <depke@mailbox.org>
Description: CluMSID is a tool that aids the identification of features
        in untargeted LC-MS/MS analysis by the use of MS2 spectra
        similarity and unsupervised statistical methods. It offers
        functions for a complete and customisable workflow from raw
        data to visualisations and is interfaceable with the xmcs
        family of preprocessing packages.
License: MIT + file LICENSE
Encoding: UTF-8
URL: https://github.com/tdepke/CluMSID
BugReports: https://github.com/tdepke/CluMSID/issues
Depends: R (>= 3.6)
biocViews: Metabolomics, Preprocessing, Clustering
Imports: mzR, S4Vectors, dbscan, RColorBrewer, ape, network, GGally,
        ggplot2, plotly, methods, utils, stats, sna, grDevices,
        graphics, Biobase, gplots, MSnbase
RoxygenNote: 6.1.1
Suggests: knitr, rmarkdown, testthat, dplyr, readr, stringr, magrittr,
        CluMSIDdata, metaMS, metaMSdata, xcms
VignetteBuilder: knitr
Config/pak/sysreqs: libglpk-dev make libicu-dev libxml2-dev
        libnetcdf-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2025-10-29 14:49:24 UTC
RemoteUrl: https://github.com/bioc/CluMSID
RemoteRef: HEAD
RemoteSha: 4f5bb4a73cf4f2bc34012a27e8ee6bd0dc0a4542
NeedsCompilation: no
Packaged: 2026-01-22 18:55:33 UTC; root
Author: Tobias Depke [aut, cre],
  Raimo Franke [ctb],
  Mark Broenstrup [ths]
Built: R 4.6.0; ; 2026-01-22 19:07:26 UTC; unix
