Changes in version 1.4.4                        

  - Fix bugs when only a single feature is being tested for
  - Add missing chunk labels in vignette

                        Changes in version 1.4.3                        

  - Switch to mgcv::scasm for monotonically decreasing p-splines

                        Changes in version 1.4.2                        

  - Adapt code for negative hypergeometric from the orphaned extraDistr
    package and take it in-house

                        Changes in version 1.4.1                        

  - Anticipate coming changes to lme4

                       Changes in version 1.2.10                        

  - Allow addition of scale bars in plotExplore and plotCells

                        Changes in version 1.2.9                        

  - Added citation file to refer to the preprint directly
  - Make sure vignettes are build upon installation and mentioned in
    readme

                        Changes in version 1.2.8                        

  - Export some convenience functions for other packages

                        Changes in version 1.2.7                        

  - Remove memory intensive looping over features in data preparation
    for mixed-effect modelling
  - Depend on Rfast package for fast rowsorting
  - Include tikzpicture as schematic overview in readme

                        Changes in version 1.2.6                        

  - Removing functionality related to Moran’s I
  - Speed up and reduce memory requirements of linear (mixed) model
    fitting by preparing design matrices only once
  - Correct bug in weighting for cell-wise nn distributions

                        Changes in version 1.2.5                        

  - Export loadBalanceBplappy for use in other packages
  - Mention Bioconductor installer in README

                        Changes in version 1.2.4                        

  - Optimize addWeightFunction

                        Changes in version 1.2.3                        

  - Some speedups in the buildDataFrame function
  - With reference to bioRxiv preprint

                        Changes in version 1.2.2                        

  - Calculate nnPair PIs only between desired features

                        Changes in version 1.2.1                        

  - Allow to pass own colours to plotExplore

                       Changes in version 0.99.44                       

  - Limit number of features to avoid windows timeout

                       Changes in version 0.99.43                       

  - Fixed bug on windows using bpnworkers()

                       Changes in version 0.99.42                       

  - Reviewed all manpages, clarifying user options

                       Changes in version 0.99.41                       

  - Clean up manpages for functions sharing the same example set

                       Changes in version 0.99.40                       

  - Use DOIs in URLs following winbuilder
  - Use makeCluster() on windows in the examples too

                       Changes in version 0.99.39                       

  - Further round of reducing documentation and test time by pooling
    examples
  - Test windows on a single core

                       Changes in version 0.99.36                       

  - Simplify documentation and reducing example runtimes by pooling
    manpages using the rdname commend

                       Changes in version 0.99.30                       

  - Reduce computation time of tests and vignettes in view of
    BioConductor server warnings
  - Automate choice of parallel backend for different operating systems
    in vignette

                       Changes in version 0.99.26                       

  - Version bump with serial processing to find bug occurring only on
    server

                       Changes in version 0.99.25                       

  - ggplot2 objects are now returned for user customization
  - Repeated return() calls are omitted
  - NEWS file was updated to reflect all changes

                       Changes in version 0.99.24                       

  - Nuclei can be plotted using plotExplore()

                       Changes in version 0.99.23                       

  - Added addNuclei() function for adding nuclei as spatstat::owin

                       Changes in version 0.99.21                       

  - Bugfix in buildDataFrame

                       Changes in version 0.99.20                       

  - Reducing running times of examples to pass R CMD CHECK

                       Changes in version 0.99.19                       

  - Shorter example times

                       Changes in version 0.99.17                       

  - Bugfix in calcnnPi

                       Changes in version 0.99.10                       

  - Reducing computation time of the examples

                       Changes in version 0.99.9                        

  - Prediction of cell types

  - Bugfixes in hyperframe building

                       Changes in version 0.99.4                        

  - Prediction of cell types

                       Changes in version 0.99.0                        

  - Submission to BioConductor

                        Changes in version 0.1.1                        

  - Use regular rather than squared distances to calculate nearest
    neighbour PIs

                        Changes in version 0.1.0                        

  - Published on github