Package: R453Plus1Toolbox
Type: Package
Title: A package for importing and analyzing data from Roche's Genome
        Sequencer System
Version: 1.60.0
Date: 2024-04-23
Author: Hans-Ulrich Klein, Christoph Bartenhagen, Christian Ruckert
Maintainer: Hans-Ulrich Klein <h.klein@uni-muenster.de>
Depends: R (>= 2.12.0), methods, VariantAnnotation (>= 1.25.11),
        Biostrings (>= 2.47.6), pwalign, Biobase
Imports: utils, grDevices, graphics, stats, tools, xtable, R2HTML,
        TeachingDemos, BiocGenerics, S4Vectors (>= 0.17.25), IRanges
        (>= 2.13.12), XVector, GenomicRanges (>= 1.31.8),
        SummarizedExperiment, biomaRt, BSgenome (>= 1.47.3), Rsamtools,
        ShortRead (>= 1.37.1)
Suggests: rtracklayer, BSgenome.Hsapiens.UCSC.hg19,
        BSgenome.Scerevisiae.UCSC.sacCer2
Description: The R453Plus1 Toolbox comprises useful functions for the
        analysis of data generated by Roche's 454 sequencing platform.
        It adds functions for quality assurance as well as for
        annotation and visualization of detected variants,
        complementing the software tools shipped by Roche with their
        product. Further, a pipeline for the detection of structural
        variants is provided.
License: LGPL-3
biocViews: Sequencing, Infrastructure, DataImport, DataRepresentation,
        Visualization, QualityControl, ReportWriting
Config/pak/sysreqs: make libbz2-dev libicu-dev libjpeg-dev liblzma-dev
        libpng-dev libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:06:02 UTC
RemoteUrl: https://github.com/bioc/R453Plus1Toolbox
RemoteRef: RELEASE_3_22
RemoteSha: d4c942142a921cc1a9c3a59db564bd42925a91c7
NeedsCompilation: yes
Packaged: 2025-12-24 08:29:20 UTC; root
Built: R 4.5.2; x86_64-w64-mingw32; 2025-12-24 08:33:04 UTC; windows
Archs: x64
