CGEN                    An R package for analysis of case-control
                        studies in genetic epidemiology
GxE.scan                GxE analysis for an array of SNPs
GxE.scan.combine        Combines output files into one file
GxE.scan.partition      Creates GxE.scan job files for a computing
                        cluster
LocusMapData            Locus map data
Manhattan.plot          Manhattan plot
QQ.plot                 QQ plot
Xdata                   Sample covariate and outcome data
Xdata2                  Sample covariate and outcome data
additive.test           A test for gene-environment interaction under
                        an additive risk model for case-control data
getMatchedSets          Case-Control and Nearest-Neighbor Matching
getSummary              Compute summary information
getWaldTest             Compute a Wald test
locusMap.list           List to describe the locus map data
pheno.list              List to describe the covariate and outcome data
printEffects            Print an effects table
snp.effects             Joint and Stratified Effects
snp.effects.plot        Effects plot
snp.list                List to describe the genotype data
snp.logistic            Logistic regression analysis for a single SNP
snp.matched             Robust G-G and G-E Interaction with
                        Finely-Matched Case-Control Data.
snp.score               Score Test
subject.list            List to describe the file of subject ids
