adt_quality_control	adt_quality_control
aggregateAcrossCells	aggregateAcrossCells
aggregateAcrossGenes	aggregateAcrossGenes
analyze	analyze
buildSnnGraph	buildSnnGraph
centerSizeFactors	centerSizeFactors
chooseHighlyVariableGenes	chooseHighlyVariableGenes
choosePseudoCount	choosePseudoCount
clusterGraph	clusterGraph
clusterKmeans	clusterKmeans
combineFactors	combineFactors
computeAdtQcMetrics	adt_quality_control
computeBlockWeights	computeBlockWeights
computeClrm1Factors	computeClrm1Factors
computeCrisprQcMetrics	crispr_quality_control
computeRnaQcMetrics	rna_quality_control
convertAnalyzeResults	convertAnalyzeResults
correctMnn	correctMnn
crispr_quality_control	crispr_quality_control
filterAdtQcMetrics	adt_quality_control
filterCrisprQcMetrics	crispr_quality_control
filterRnaQcMetrics	rna_quality_control
fitVarianceTrend	fitVarianceTrend
modelGeneVariances	modelGeneVariances
normalizeCounts	normalizeCounts
reportGroupMarkerStatistics	reportGroupMarkerStatistics
rna_quality_control	rna_quality_control
runAllNeighborSteps	runAllNeighborSteps
runPca	runPca
runTsne	runTsne
runUmap	runUmap
sanitizeSizeFactors	sanitizeSizeFactors
scaleByNeighbors	scaleByNeighbors
scoreGeneSet	scoreGeneSet
scoreMarkers	scoreMarkers
subsampleByNeighbors	subsampleByNeighbors
suggestAdtQcThresholds	adt_quality_control
suggestCrisprQcThresholds	crispr_quality_control
suggestRnaQcThresholds	rna_quality_control
summarizeEffects	summarizeEffects
testEnrichment	testEnrichment
tsnePerplexityToNeighbors	runTsne
