Package: HoloFoodR
Type: Package
Version: 1.4.0
Authors@R: 
    c(
    person(
        given = "Tuomas", family = "Borman", role = c("aut", "cre"),
        email = "tuomas.v.borman@utu.fi",
        comment = c(ORCID = "0000-0002-8563-8884")
        ),
    person(
        given = "Artur", family = "Sannikov", role = c("aut"),
        email = "arsann@utu.fi",
        comment = c(ORCID = "0000-0001-7765-123X")
        ),
    person(
        given = "Leo", family = "Lahti", role = c("aut"),
        email = "leo.lahti@iki.fi",
        comment = c(ORCID = "0000-0001-5537-637X")
        )
    )
Title: R interface to EBI HoloFood resource
Description: 
    Utility package to facilitate integration and analysis of EBI HoloFood data
    in R. This package streamlines access to the resource, allowing for direct
    loading of data into formats optimized for downstream analytics.
biocViews: Software, Infrastructure, DataImport, Microbiome,
        MicrobiomeData
License: Artistic-2.0 | file LICENSE
Encoding: UTF-8
Depends: R(>= 4.4.0), MultiAssayExperiment, TreeSummarizedExperiment
Imports: dplyr, httr2, jsonlite, S4Vectors, stringi, stats,
        SummarizedExperiment, utils
Suggests: BiocStyle, DT, ggh4x, ggsignif, knitr, MGnifyR, mia, miaViz,
        MOFA2, patchwork, reticulate, rmarkdown, scater, shadowtext,
        testthat, UpSetR
URL: https://github.com/EBI-Metagenomics/HoloFoodR
BugReports: https://github.com/EBI-Metagenomics/HoloFoodR/issues
VignetteBuilder: knitr
RoxygenNote: 7.3.2
git_url: https://git.bioconductor.org/packages/HoloFoodR
git_branch: RELEASE_3_22
git_last_commit: e2cd9d0
git_last_commit_date: 2025-10-29
Repository: Bioconductor 3.22
Date/Publication: 2025-10-29
NeedsCompilation: no
Packaged: 2025-10-30 03:06:42 UTC; biocbuild
Author: Tuomas Borman [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8563-8884>),
  Artur Sannikov [aut] (ORCID: <https://orcid.org/0000-0001-7765-123X>),
  Leo Lahti [aut] (ORCID: <https://orcid.org/0000-0001-5537-637X>)
Maintainer: Tuomas Borman <tuomas.v.borman@utu.fi>
Built: R 4.5.1; ; 2025-10-30 09:27:52 UTC; unix
