KEGGandMetacoreDzPathwaysGEO

This is the released version of KEGGandMetacoreDzPathwaysGEO; for the devel version, see KEGGandMetacoreDzPathwaysGEO.

Disease Datasets from GEO

Bioconductor version: Release (3.21)

This is a collection of 18 data sets for which the phenotype is a disease with a corresponding pathway in either KEGG or metacore database.This collection of datasets were used as gold standard in comparing gene set analysis methods.

Author: Gaurav Bhatti

Maintainer: Gaurav Bhatti <gbhatti at med.wayne.edu>

Citation (from within R, enter citation("KEGGandMetacoreDzPathwaysGEO")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("KEGGandMetacoreDzPathwaysGEO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("KEGGandMetacoreDzPathwaysGEO")

KEGGandMetacoreDzPathwaysGEO Vignette	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ExperimentData, GEO
Version	1.28.0
License	GPL-2
Depends	R (>= 2.15.0)
Imports	Biobase, BiocGenerics
System Requirements
URL

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Imports Me	GSEABenchmarkeR
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Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	KEGGandMetacoreDzPathwaysGEO_1.28.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/KEGGandMetacoreDzPathwaysGEO
Package Short Url	https://bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO/
Package Downloads Report	Download Stats