| openPrimeR-package | Multiplex PCR Primer Design and Analysis. |
| adjust_binding_regions | Template Functionalities. |
| AnalysisStats | Primer Analysis Statistics. |
| assign_binding_regions | Template Functionalities. |
| check_constraints | Primer Evaluation. |
| check_restriction_sites | Primer Evaluation. |
| classify_design_problem | Primer Design Functionalities. |
| conOptions | Settings Functionalities. |
| conOptions-method | Settings Functionalities. |
| conOptions<- | Settings Functionalities. |
| conOptions<--method | Settings Functionalities. |
| constraintLimits | Settings Functionalities. |
| constraintLimits-method | Settings Functionalities. |
| constraintLimits<- | Settings Functionalities. |
| constraintLimits<--method | Settings Functionalities. |
| ConstraintOptions | Settings Functionalities. |
| ConstraintOptions-class | Settings Functionalities. |
| constraints | Settings Functionalities. |
| constraints-method | Settings Functionalities. |
| constraints<- | Settings Functionalities. |
| constraints<--method | Settings Functionalities. |
| ConstraintSettings | Settings Functionalities. |
| ConstraintSettings-class | Settings Functionalities. |
| CoverageConstraints | Settings Functionalities. |
| CoverageConstraints-class | Settings Functionalities. |
| create_coverage_xls | Output Functionalities. |
| create_report | Output Functionalities. |
| cvg_constraints | Settings Functionalities. |
| cvg_constraints-method | Settings Functionalities. |
| cvg_constraints<- | Settings Functionalities. |
| cvg_constraints<--method | Settings Functionalities. |
| Data | Data Sets. |
| DesignSettings | Settings Functionalities. |
| DesignSettings-class | Settings Functionalities. |
| design_primers | Primer Design Functionalities. |
| feature.matrix | Data Sets. |
| filter_primers | Primer Evaluation. |
| get_comparison_table | Primer Analysis Statistics. |
| get_cvg_ratio | Primer Analysis Statistics. |
| get_cvg_stats | Primer Analysis Statistics. |
| get_cvg_stats_primer | Primer Analysis Statistics. |
| get_initial_primers | Primer Design Functionalities. |
| Input | Input Functionalities. |
| openPrimeR | Multiplex PCR Primer Design and Analysis. |
| Output | Output Functionalities. |
| parallel_setup | Settings Functionalities. |
| PCR | Settings Functionalities. |
| PCR-method | Settings Functionalities. |
| PCR<- | Settings Functionalities. |
| PCR<--method | Settings Functionalities. |
| PCR_Conditions | Settings Functionalities. |
| PCR_Conditions-class | Settings Functionalities. |
| Plots | Plotting Functions. |
| plot_conservation | Plotting Functions. |
| plot_constraint | Plotting Functions. |
| plot_constraint_deviation | Plotting Functions. |
| plot_constraint_fulfillment | Plotting Functions. |
| plot_cvg_constraints | Plotting Functions. |
| plot_cvg_vs_set_size | Plotting Functions. |
| plot_penalty_vs_set_size | Plotting Functions. |
| plot_primer | Plotting Functions. |
| plot_primer_binding_regions | Plotting Functions. |
| plot_primer_cvg | Plotting Functions. |
| plot_primer_subsets | Plotting Functions. |
| plot_template_cvg | Plotting Functions. |
| primer.data | Data Sets. |
| primer.df | Data Sets. |
| PrimerDesign | Primer Design Functionalities. |
| PrimerEval | Primer Evaluation. |
| Primers | Input Functionalities. |
| Primers-class | Input Functionalities. |
| primer_significance | Primer Evaluation. |
| read_primers | Input Functionalities. |
| read_settings | Input Functionalities. |
| read_templates | Input Functionalities. |
| ref.data | Data Sets. |
| RefCoverage | Data Sets. |
| runTutorial | The openPrimeR Tutorial. |
| score_conservation | Scoring Functions. |
| score_degen | Scoring Functions. |
| score_primers | Scoring Functions. |
| Scoring | Scoring Functions. |
| select_regions_by_conservation | Template Functionalities. |
| Settings | Settings Functionalities. |
| settings | Data Sets. |
| subset_primer_set | Primer Evaluation. |
| template.data | Data Sets. |
| template.df | Data Sets. |
| Templates | Input Functionalities. |
| Templates-class | Input Functionalities. |
| TemplatesFunctions | Template Functionalities. |
| Tiller | Data Sets. |
| tiller.primer.df | Data Sets. |
| tiller.settings | Data Sets. |
| tiller.template.df | Data Sets. |
| update_template_cvg | Template Functionalities. |
| write_primers | Output Functionalities. |
| write_settings | Output Functionalities. |
| write_templates | Output Functionalities. |