Package: shinyDSP
Title: A Shiny App For Visualizing Nanostring GeoMx DSP Data
Version: 1.0.3
Description: 
    This package is a Shiny app for interactively analyzing and visualizing 
    Nanostring GeoMX Whole Transcriptome Atlas data. Users have the option of 
    exploring a sample data to explore this app's functionality. Regions of 
    interest (ROIs) can be filtered based on any user-provided metadata. Upon 
    taking two or more groups of interest, all pairwise and ANOVA-like testing 
    are automatically performed. Available ouputs include PCA, Volcano plots, 
    tables and heatmaps. Aesthetics of each output are highly customizable. 
Authors@R: 
    c(person("Seung J.", "Kim" , ,"skim823@uwo.ca", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-5263-0758")),
    person("Marco", "Mura",  ,"marco.mura@respirology.site.co", role = c("aut","fnd"))
    )           
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Imports: AnnotationHub, BiocGenerics, bsicons, bslib, circlize,
        ComplexHeatmap, cowplot, dplyr, DT, edgeR, ExperimentHub,
        ggplot2, ggpubr, ggrepel, grDevices, grid, htmltools, limma,
        magrittr, pals, readr, S4Vectors, scales, scater, shiny,
        shinycssloaders, shinyjs, shinyvalidate, shinyWidgets,
        SingleCellExperiment, standR, stats, stringr,
        SummarizedExperiment, tibble, tidyr, utils, withr
biocViews: DifferentialExpression, GeneExpression, ShinyApps, Spatial,
        Transcriptomics
URL: https://github.com/kimsjune/shinyDSP, http://joonkim.ca/shinyDSP/
BugReports: https://github.com/kimsjune/shinyDSP/issues
Suggests: BiocStyle, knitr, rmarkdown, shinytest2, spelling, svglite,
        testthat (>= 3.0.0)
Language: en-US
Depends: R (>= 4.5)
Config/testthat/edition: 3
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/shinyDSP
git_branch: RELEASE_3_21
git_last_commit: 12362c3
git_last_commit_date: 2025-06-16
Repository: Bioconductor 3.21
Date/Publication: 2025-06-19
NeedsCompilation: no
Packaged: 2025-06-20 03:09:16 UTC; biocbuild
Author: Seung J. Kim [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-5263-0758>),
  Marco Mura [aut, fnd]
Maintainer: Seung J. Kim <skim823@uwo.ca>
Built: R 4.5.1; ; 2025-06-20 18:09:28 UTC; unix
