Package: seqsetvis
Type: Package
Title: Set Based Visualizations for Next-Gen Sequencing Data
Version: 1.28.0
Authors@R: person("Joseph R", "Boyd", email = "jrboyd@uvm.edu",
                  role = c("aut", "cre"), comment = c(ORCID="0000-0002-8969-9676"))
Description: seqsetvis enables the visualization and analysis of sets of 
    genomic sites in next gen sequencing data. 
    Although seqsetvis was designed for the comparison of 
    mulitple ChIP-seq samples, this package is domain-agnostic and allows the 
    processing of multiple genomic coordinate files (bed-like files) and 
    signal files (bigwig files pileups from bam file). seqsetvis has multiple
    functions for fetching data from regions into a tidy format for analysis in 
    data.table or tidyverse and visualization via ggplot2.
License: MIT + file LICENSE
Encoding: UTF-8
Suggests: BiocFileCache, BiocManager, BiocStyle, ChIPpeakAnno, covr,
        knitr, rmarkdown, testthat
Depends: R (>= 4.3), ggplot2
Imports: cowplot, data.table, eulerr, GenomeInfoDb, GenomicAlignments,
        GenomicRanges, ggplotify, grDevices, grid, IRanges, limma,
        methods, pbapply, pbmcapply, png, RColorBrewer, Rsamtools,
        rtracklayer, S4Vectors, scales, stats, UpSetR
RoxygenNote: 7.3.1
Roxygen: list(markdown = TRUE)
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2025-04-15 23:40:18 UTC; biocbuild
biocViews: Software, ChIPSeq, MultipleComparison, Sequencing,
        Visualization
git_url: https://git.bioconductor.org/packages/seqsetvis
git_branch: RELEASE_3_21
git_last_commit: 28d6e95
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
Author: Joseph R Boyd [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-8969-9676>)
Maintainer: Joseph R Boyd <jrboyd@uvm.edu>
Built: R 4.5.0; ; 2025-04-16 06:27:57 UTC; unix
