rWikiPathways - R client library for the WikiPathways API
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Documentation for package ‘rWikiPathways’ version 1.27.0
Help Pages
| downloadPathwayArchive | Download Pathway Archive |
| findPathwayIdsByLiterature | Find Pathway WPIDs By Literature |
| findPathwayIDsByOrcid | Find Pathway WPIDs By ORCID |
| findPathwayIdsByText | Find Pathway WPIDs By Text |
| findPathwayIdsByXref | Find Pathway WPIDs By Xref |
| findPathwayNamesByLiterature | Find Pathway Names By Literature |
| findPathwayNamesByOrcid | Find Pathway Names By ORCID |
| findPathwayNamesByText | Find Pathway Names By Text |
| findPathwayNamesByXref | Find Pathway Names By Xref |
| findPathwaysByLiterature | Find Pathways By Literature |
| findPathwaysByOrcid | Find Pathways By ORCID |
| findPathwaysByText | Find Pathways By Text |
| findPathwaysByXref | Find Pathways By Xref |
| findPathwayUrlsByLiterature | Find Pathway URLs By Literature |
| findPathwayUrlsByOrcid | Find Pathway URLs By ORCID |
| findPathwayUrlsByText | Find Pathway URLs By Text |
| findPathwayUrlsByXref | Find Pathway URLs By Xref |
| getCounts | Get Counts for WikiPathways Stats |
| getCurationStatus | Get Curation Status of a Pathway |
| getCurationTagNames | DEPRECATED: Get Curation Tag Names on a Pathway |
| getCurationTags | DEPRECATED: Get Curation Tags on a Pathway |
| getEveryCurationTag | DEPRECATED: Get Every Instance of a Curation Tag |
| getOntologyTermIds | Get Ontology Term IDs by Pathway |
| getOntologyTermNames | Get Ontology Term Names by Pathway |
| getOntologyTerms | Get Ontology Terms by Pathway |
| getPathway | Get Pathway |
| getPathwayHistory | Get Pathway History |
| getPathwayIdsByCommunity | Get Pathway IDs By Community |
| getPathwayIdsByCurationTag | DEPRECATED: Get Pathway WPIDs by Curation Tag |
| getPathwayIdsByOntologyTerm | Get Pathway WPIDs by Ontology Term |
| getPathwayIdsByParentOntologyTerm | Get Pathway WPIDs by Parent Ontology Term |
| getPathwayInfo | Get Pathway Info |
| getPathwayNamesByCommunity | Get Pathway Names By Community |
| getPathwaysByCommunity | Get Pathways By Community |
| getPathwaysByCurationTag | DEPRECATED: Get Pathways by Curation Tag |
| getPathwaysByOntologyTerm | Get Pathways by Ontology Term |
| getPathwaysByParentOntologyTerm | Get Pathways by Parent Ontology Term |
| getPathwayUrlsByCommunity | Get Pathway URLs By Community |
| getRecentChanges | Get Recent Changes |
| getRecentChangesIds | Get WPIDs of Recent Changes |
| getRecentChangesNames | Get Pathway Names of Recent Changes |
| getXrefList | Get Xref List |
| listCommunities | List Communities |
| listOrganisms | List Organisms |
| listPathwayIds | List Pathway WPIDs |
| listPathwayNames | List Pathway Names |
| listPathways | List Pathways |
| listPathwayUrls | List Pathway URLs |
| readGMT | Read GMT File |
| readGMTnames | Read GMT File for Names |
| readPathwayGMT | Read Pathway GMT File |
| wikipathwaysAPI | DEPRECATED: Open Swagger docs for WikiPathways API |
| wikipathwaysGET | DEPRECATED: WikiPathways GET |
| writeGMT | Write GMT File |