Package: goSorensen
Type: Package
Title: Statistical inference based on the Sorensen-Dice dissimilarity
        and the Gene Ontology (GO)
Version: 1.10.0
Description: This package implements inferential methods to compare gene lists in terms of their biological meaning as expressed in the GO. The compared gene lists are characterized by cross-tabulation frequency tables of enriched GO items. Dissimilarity between gene lists is evaluated using the Sorensen-Dice index.
    The fundamental guiding principle is that two gene lists are taken as similar if they share a great proportion of common enriched GO items.
Authors@R: 
  c(person("Pablo", "Flores", role = c("aut", "cre"), 
            email = "p_flores@espoch.edu.ec", 
            comment = c(ORCID = "0000-0002-7156-8547")),
    person("Jordi", "Ocana", role = c("aut", "ctb"), 
            comment = c(ORCID = "0000-0002-4736-699")),
    person("Alexandre", "Sanchez-Pla", role = "ctb", 
            comment = c(ORCID = "0000-0002-8673-7737")),
	  person("Miquel", "Salicru", role = "ctb", 
	          comment = c(ORCID = "0000-0001-9644-5626")))
Depends: R (>= 4.4)
Imports: clusterProfiler, goProfiles, org.Hs.eg.db, parallel, stats,
        stringr
Suggests: BiocManager, BiocStyle, knitr, rmarkdown, org.At.tair.db,
        org.Ag.eg.db, org.Bt.eg.db, org.Ce.eg.db, org.Cf.eg.db,
        org.Dm.eg.db, org.Dr.eg.db, org.EcSakai.eg.db, org.EcK12.eg.db,
        org.Gg.eg.db, org.Mm.eg.db, org.Mmu.eg.db, org.Rn.eg.db,
        org.Sc.sgd.db, org.Ss.eg.db, org.Pt.eg.db, org.Xl.eg.db, GO.db,
        ggplot2, ggrepel, DT, magick
VignetteBuilder: knitr
License: GPL-3
Encoding: UTF-8
LazyData: false
RoxygenNote: 7.3.2
NeedsCompilation: no
Packaged: 2025-04-15 22:14:52 UTC; biocbuild
biocViews: Annotation, GO, GeneSetEnrichment, Software, Microarray,
        Pathways, GeneExpression, MultipleComparison, GraphAndNetwork,
        Reactome, Clustering, KEGG
Author: Pablo Flores [aut, cre] (<https://orcid.org/0000-0002-7156-8547>),
  Jordi Ocana [aut, ctb] (0000-0002-4736-699),
  Alexandre Sanchez-Pla [ctb] (<https://orcid.org/0000-0002-8673-7737>),
  Miquel Salicru [ctb] (<https://orcid.org/0000-0001-9644-5626>)
Maintainer: Pablo Flores <p_flores@espoch.edu.ec>
git_url: https://git.bioconductor.org/packages/goSorensen
git_branch: RELEASE_3_21
git_last_commit: b1b685d
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
Built: R 4.5.0; ; 2025-04-16 06:07:34 UTC; unix
