Package: conumee
Title: Enhanced copy-number variation analysis using Illumina DNA
        methylation arrays
Version: 1.42.0
Author: Volker Hovestadt, Marc Zapatka
Maintainer: Volker Hovestadt <conumee@hovestadt.bio>
Address: Division of Molecular Genetics, German Cancer Research Center
        (DKFZ), Heidelberg, Germany
Description: This package contains a set of processing and plotting methods
    for performing copy-number variation (CNV) analysis using Illumina 450k or EPIC
    methylation arrays.
Imports: methods, stats, DNAcopy, rtracklayer, GenomicRanges, IRanges,
        GenomeInfoDb
Depends: R (>= 3.5.0), minfi,
        IlluminaHumanMethylation450kanno.ilmn12.hg19,
        IlluminaHumanMethylation450kmanifest,
        IlluminaHumanMethylationEPICanno.ilm10b2.hg19,
        IlluminaHumanMethylationEPICmanifest
Suggests: BiocStyle, knitr, rmarkdown, minfiData, RCurl
License: GPL (>= 2)
LazyData: false
Collate: classes.R annotation.R load.R process.R output.R data.R
biocViews: CopyNumberVariation, DNAMethylation, MethylationArray,
        Microarray, Normalization, Preprocessing, QualityControl,
        Software
VignetteBuilder: knitr
RoxygenNote: 6.0.1
git_url: https://git.bioconductor.org/packages/conumee
git_branch: RELEASE_3_21
git_last_commit: 85f58e7
git_last_commit_date: 2025-04-15
Repository: Bioconductor 3.21
Date/Publication: 2025-04-15
NeedsCompilation: no
Packaged: 2025-04-15 21:41:18 UTC; biocbuild
Built: R 4.5.0; ; 2025-04-16 05:59:01 UTC; unix
