Import Visium data from the 10X Space Ranger pipeline


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Documentation for package ‘VisiumIO’ version 1.4.1

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.TENxSpatialCSV Represent and import spatial CSV data from 10X Genomics
.TENxSpatialList A class to represent and import spatial Visium data
.TENxSpatialParquet Represent and import spatial Parquet data from 10X Genomics
.TENxVisium A class to represent and import a single Visium Sample
.TENxVisiumHD A class to represent and import multiple Visium HD samples
.TENxVisiumList A class to represent and import multiple Visium samples
compareBarcodes Compare barcodes between raw and filtered data
import-method Represent and import spatial CSV data from 10X Genomics
import-method A class to represent and import spatial Visium data
import-method Represent and import spatial Parquet data from 10X Genomics
import-method A class to represent and import a single Visium Sample
import-method A class to represent and import multiple Visium HD samples
import-method A class to represent and import multiple Visium samples
TENxSpatialCSV Represent and import spatial CSV data from 10X Genomics
TENxSpatialCSV-class Represent and import spatial CSV data from 10X Genomics
TENxSpatialList A class to represent and import spatial Visium data
TENxSpatialList-class A class to represent and import spatial Visium data
TENxSpatialParquet Represent and import spatial Parquet data from 10X Genomics
TENxSpatialParquet-class Represent and import spatial Parquet data from 10X Genomics
TENxVisium A class to represent and import a single Visium Sample
TENxVisium-class A class to represent and import a single Visium Sample
TENxVisiumHD A class to represent and import multiple Visium HD samples
TENxVisiumHD-class A class to represent and import multiple Visium HD samples
TENxVisiumList A class to represent and import multiple Visium samples
TENxVisiumList-class A class to represent and import multiple Visium samples