addRowRanges	addRowRanges
add_gene_counts	add_gene_counts
annotation_to_fasta	annotation_to_fasta
blaze	blaze
bulk_long_pipeline	bulk_long_pipeline
combine_sce	combine_sce
convolution_filter	convolution_filter
create_config	create_config
create_sce_from_dir	create_sce_from_dir
create_se_from_dir	create_se_from_dir
create_spe	create_spe
cutadapt	cutadapt
demultiplex_sockeye	demultiplex_sockeye
fake_stranded_gff	fake_stranded_gff
filter_annotation	filter_annotation
filter_coverage	filter_coverage
find_barcode	find_barcode
find_bin	find_bin
find_isoform	find_isoform
find_variants	find_variants
FLAMES	FLAMES
flexiplex	flexiplex
get_coverage	get_coverage
get_GRangesList	get_GRangesList
minimap2_align	minimap2_align
minimap2_realign	minimap2_realign
mutation_positions	mutation_positions
mutation_positions_single	mutation_positions_single
plot_coverage	plot_coverage
plot_demultiplex	plot_demultiplex
plot_isoforms	plot_isoforms
plot_isoform_heatmap	plot_isoform_heatmap
plot_isoform_reduced_dim	plot_isoform_reduced_dim
plot_spatial_feature	plot_spatial_feature
plot_spatial_isoform	plot_spatial_isoform
plot_spatial_pie	plot_spatial_pie
quantify_gene	quantify_gene
quantify_transcript	quantify_transcript
quantify_transcript_flames	quantify_transcript_flames
scmixology_lib10	scmixology_lib10
scmixology_lib10_transcripts	scmixology_lib10_transcripts
scmixology_lib90	scmixology_lib90
sc_DTU_analysis	sc_DTU_analysis
sc_impute_transcript	sc_impute_transcript
sc_long_multisample_pipeline	sc_long_multisample_pipeline
sc_long_pipeline	sc_long_pipeline
sc_mutations	sc_mutations
weight_transcripts	weight_transcripts
