ASpliSE | ASpliSE |
BamtoAspliCounts | Converting BAM files to an ASpli-SummarizedExperiment, which contains gene, bin and junction counts. |
calculateOffsets | calculating the offsets to perform aberrant expression or splicing analysis. |
convertASpli | Converting SummarizedExperiment with different ASpli-counts to gene, bin or junction level counts. |
features | features |
saseRExample | saseRExample |
saseRfindEncodingDim | Determine the optimal number of latent factors to detect outlier gene expression or splicing |
saseRfit | Searching for aberrant expression or splicing. |
SEbins | SEbins |
SEgenes | SEgenes |
SEjunctions | SEjunctions |