Scalable Aberrant Splicing and Expression Retrieval


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Documentation for package ‘saseR’ version 1.3.0

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ASpliSE ASpliSE
BamtoAspliCounts Converting BAM files to an ASpli-SummarizedExperiment, which contains gene, bin and junction counts.
calculateOffsets calculating the offsets to perform aberrant expression or splicing analysis.
convertASpli Converting SummarizedExperiment with different ASpli-counts to gene, bin or junction level counts.
features features
saseRExample saseRExample
saseRfindEncodingDim Determine the optimal number of latent factors to detect outlier gene expression or splicing
saseRfit Searching for aberrant expression or splicing.
SEbins SEbins
SEgenes SEgenes
SEjunctions SEjunctions